Stages implemented in TX-Pipe:
==============================
These are the stages implemented so far:

The base stage:
---------------
.. toctree::

    base_stage


Ingestion stages:
-----------------
.. toctree::

    ingest_redmagic
    metacal_gcr_input
    exposure_info
    input_cats


Selection and Tomography stages:
--------------------------------
.. toctree::

    source_selector
    lens_selector

Photoz stages:
--------------
.. toctree::

    photoz 
    photoz_mlz
    photoz_stack


Maps and Mask stages:
---------------------
 .. toctree::   

    maps 
    auxiliary_maps
    noise_maps
    masks 


Two point stages:
-----------------
.. toctree::

    random_cats
    twopoint
    twopoint_fourier
    map_correlations
    covariance


Plotting and diagnostics:
-------------------------
.. toctree::

    blinding
    convergence
    diagnostics
    map_plots
    metadata
    psf_diagnostics




Extra utilities
---------------
These are a bunch of shared utilities and plotting functions

.. toctree::

    data_types
    mapping
    plotting
    randoms 
    ui 
    utils