TXPipe
Contents:
TXPipe Installation
Running an example pipeline
Running a pipeline:
Reading HDF5 Files
Stages implemented in TX-Pipe:
TXPipe
»
Index
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
|
Y
_
__annotations__ (txpipe.base_stage.PipelineStage attribute)
__call__() (txpipe.base_stage.PipelineStage method)
__contains__() (txpipe.base_stage.PipelineStage method)
__dict__ (txpipe.base_stage.PipelineStage attribute)
__display_name__ (txpipe.base_stage.PipelineStage attribute)
__getattr__() (txpipe.base_stage.PipelineStage method)
__getitem__() (txpipe.base_stage.PipelineStage method)
__getnewargs__() (txpipe.twopoint.Measurement method)
(txpipe.twopoint_fourier.Measurement method)
__init__() (txpipe.base_stage.PipelineStage method)
__iter__() (txpipe.base_stage.PipelineStage method)
__len__() (txpipe.base_stage.PipelineStage method)
__module__ (txpipe.base_stage.PipelineStage attribute)
__mro_entries__() (txpipe.base_stage.PipelineStage method)
__new__() (txpipe.base_stage.PipelineStage static method)
(txpipe.twopoint.Measurement static method)
(txpipe.twopoint_fourier.Measurement static method)
__orig_bases__ (txpipe.base_stage.PipelineStage attribute)
__repr__() (txpipe.base_stage.PipelineStage method)
(txpipe.twopoint.Measurement method)
(txpipe.twopoint_fourier.Measurement method)
__sphinx_decorator_args__ (txpipe.base_stage.PipelineStage attribute)
__sphinx_mock__ (txpipe.base_stage.PipelineStage attribute)
__weakref__ (txpipe.base_stage.PipelineStage attribute)
A
accumulate_maps() (txpipe.auxiliary_maps.TXAuxiliaryLensMaps method)
(txpipe.auxiliary_maps.TXAuxiliarySourceMaps method)
(txpipe.maps.TXBaseMaps method)
(txpipe.maps.TXLensMaps method)
(txpipe.maps.TXSourceMaps method)
(txpipe.noise_maps.TXExternalLensNoiseMaps method)
(txpipe.noise_maps.TXSourceNoiseMaps method)
add_data() (txpipe.mapping.basic_maps.FlagMapper method)
(txpipe.mapping.basic_maps.Mapper method)
(txpipe.mapping.dr1.BrightObjectMapper method)
(txpipe.mapping.dr1.DepthMapperDR1 method)
(txpipe.utils.calibration_tools.HSCCalculator method)
(txpipe.utils.calibration_tools.LensfitCalculator method)
(txpipe.utils.calibration_tools.MetacalCalculator method)
add_provenance() (txpipe.data_types.base.DataFile method)
apply_classifier() (txpipe.source_selector.TXSourceSelector method)
apply_galaxy_bias_ggl() (in module txpipe.plotting.correlations)
apply_magnitude_cut() (txpipe.input_cats.TXCosmoDC2Mock method)
axis_setup() (in module txpipe.plotting.correlations)
B
BrightObjectMapper (class in txpipe.mapping.dr1)
C
calculate_photozs() (txpipe.photoz.TXRandomPhotozPDF method)
(txpipe.photoz_mlz.PZPDFMLZ method)
calculate_tomography() (txpipe.source_selector.TXSourceSelector method)
call_treecorr() (txpipe.twopoint.TXTwoPoint method)
catalog_type (txpipe.data_types.types.ShearCatalog property)
choose_pixel_scheme() (txpipe.auxiliary_maps.TXAuxiliaryLensMaps method)
(txpipe.auxiliary_maps.TXAuxiliarySourceMaps method)
(txpipe.maps.TXBaseMaps method)
(txpipe.noise_maps.TXExternalLensNoiseMaps method)
(txpipe.noise_maps.TXSourceNoiseMaps method)
close() (txpipe.data_types.base.DataFile method)
(txpipe.data_types.base.FitsFile method)
(txpipe.data_types.base.HDFFile method)
(txpipe.data_types.base.PNGFile method)
(txpipe.data_types.types.SACCFile method)
ClusteringNoiseMaps (class in txpipe.data_types.types)
collect() (txpipe.utils.calibration_tools.HSCCalculator method)
(txpipe.utils.calibration_tools.LensfitCalculator method)
(txpipe.utils.calibration_tools.MetacalCalculator method)
combined_iterators() (txpipe.base_stage.PipelineStage method)
config_options (txpipe.base_stage.PipelineStage attribute)
corr_type (txpipe.twopoint.Measurement attribute)
(txpipe.twopoint_fourier.Measurement attribute)
create_dataset_early_allocated() (in module txpipe.utils.hdf_tools)
CSVFile (class in txpipe.data_types.types)
D
data_iterator() (txpipe.auxiliary_maps.TXAuxiliaryLensMaps method)
(txpipe.auxiliary_maps.TXAuxiliarySourceMaps method)
(txpipe.maps.TXBaseMaps method)
(txpipe.maps.TXExternalLensMaps method)
(txpipe.maps.TXLensMaps method)
(txpipe.maps.TXMainMaps method)
(txpipe.maps.TXSourceMaps method)
(txpipe.noise_maps.TXExternalLensNoiseMaps method)
(txpipe.noise_maps.TXSourceNoiseMaps method)
DataFile (class in txpipe.data_types.base)
DepthMapperDR1 (class in txpipe.mapping.dr1)
dilated_healpix_map() (in module txpipe.utils.healpix)
Directory (class in txpipe.data_types.base)
E
extract_observables_plot_data() (in module txpipe.plotting.correlations)
F
FiducialCosmology (class in txpipe.data_types.types)
FileCollection (class in txpipe.data_types.base)
FileValidationError
finalize() (txpipe.mapping.basic_maps.FlagMapper method)
(txpipe.mapping.basic_maps.Mapper method)
(txpipe.mapping.dr1.BrightObjectMapper method)
(txpipe.mapping.dr1.DepthMapperDR1 method)
finalize_mappers() (txpipe.auxiliary_maps.TXAuxiliaryLensMaps method)
(txpipe.auxiliary_maps.TXAuxiliarySourceMaps method)
(txpipe.maps.TXBaseMaps method)
(txpipe.maps.TXLensMaps method)
(txpipe.maps.TXMainMaps method)
(txpipe.maps.TXSourceMaps method)
(txpipe.noise_maps.TXExternalLensNoiseMaps method)
(txpipe.noise_maps.TXSourceNoiseMaps method)
find_module_versions() (in module txpipe.utils.provenance)
fit_straight_line() (in module txpipe.utils.fitting)
FitsFile (class in txpipe.data_types.base)
FlagMapper (class in txpipe.mapping.basic_maps)
full_3x2pt_plots() (in module txpipe.plotting.correlations)
G
gather_provenance() (txpipe.base_stage.PipelineStage method)
generate_provenance() (txpipe.data_types.base.DataFile static method)
get_caller_directory() (in module txpipe.utils.provenance)
get_metadata() (txpipe.photoz_stack.TXLensTrueNumberDensity method)
(txpipe.photoz_stack.TXPhotozLensStack method)
(txpipe.photoz_stack.TXPhotozSourceStack method)
(txpipe.photoz_stack.TXSourceTrueNumberDensity method)
get_n_of_z() (txpipe.data_types.types.NOfZFile method)
get_n_of_z_spline() (txpipe.data_types.types.NOfZFile method)
get_nbin() (txpipe.data_types.types.NOfZFile method)
get_patch_dir() (txpipe.twopoint.TXTwoPoint method)
git_current_revision() (in module txpipe.utils.provenance)
git_diff() (in module txpipe.utils.provenance)
H
HDFFile (class in txpipe.data_types.base)
hex_escape() (in module txpipe.utils.misc)
HSCCalculator (class in txpipe.utils.calibration_tools)
I
i (txpipe.twopoint.Measurement attribute)
(txpipe.twopoint_fourier.Measurement attribute)
inputs (txpipe.base_stage.PipelineStage attribute)
J
j (txpipe.twopoint.Measurement attribute)
(txpipe.twopoint_fourier.Measurement attribute)
L
l (txpipe.twopoint_fourier.Measurement attribute)
LensfitCalculator (class in txpipe.utils.calibration_tools)
LensingNoiseMaps (class in txpipe.data_types.types)
list_maps() (txpipe.data_types.types.MapsFile method)
load_metacal_response_model() (txpipe.input_cats.TXCosmoDC2Mock method)
M
make_axis() (in module txpipe.plotting.correlations)
make_mock_metacal() (txpipe.input_cats.TXCosmoDC2Mock method)
make_mock_photometry() (in module txpipe.input_cats)
make_name() (txpipe.data_types.base.DataFile class method)
make_plot() (in module txpipe.plotting.correlations)
make_theory_plot_data() (in module txpipe.plotting.correlations)
manual_step_histogram() (in module txpipe.plotting.histogram)
Mapper (class in txpipe.mapping.basic_maps)
MapsFile (class in txpipe.data_types.types)
Measurement (class in txpipe.twopoint)
(class in txpipe.twopoint_fourier)
memory_report() (txpipe.base_stage.PipelineStage method)
MetacalCalculator (class in txpipe.utils.calibration_tools)
metacalibration_names() (in module txpipe.data_types.types)
missing_columns() (txpipe.data_types.base.FitsFile method)
module
txpipe.auxiliary_maps
txpipe.base_stage
txpipe.blinding
txpipe.convergence
txpipe.covariance
txpipe.data_types.base
txpipe.data_types.types
txpipe.diagnostics
txpipe.exposure_info
txpipe.ingest_redmagic
txpipe.input_cats
txpipe.lens_selector
txpipe.map_correlations
txpipe.map_plots
txpipe.mapping.basic_maps
txpipe.mapping.dr1
txpipe.maps
txpipe.masks
txpipe.metacal_gcr_input
txpipe.metadata
txpipe.noise_maps
txpipe.photoz
txpipe.photoz_mlz
txpipe.photoz_stack
txpipe.plotting.correlations
txpipe.plotting.histogram
txpipe.psf_diagnostics
txpipe.random_cats
txpipe.randoms.randoms
txpipe.source_selector
txpipe.twopoint
txpipe.twopoint_fourier
txpipe.utils.calibration_tools
txpipe.utils.fitting
txpipe.utils.hdf_tools
txpipe.utils.healpix
txpipe.utils.misc
txpipe.utils.mpi_utils
txpipe.utils.nmt_utils
txpipe.utils.provenance
txpipe.utils.theory
txpipe.utils.timer
mpi_reduce_large() (in module txpipe.utils.mpi_utils)
MyNmtBin (class in txpipe.utils.nmt_utils)
MyNmtBinFlat (class in txpipe.utils.nmt_utils)
N
name (txpipe.auxiliary_maps.TXAuxiliaryLensMaps attribute)
(txpipe.auxiliary_maps.TXAuxiliarySourceMaps attribute)
(txpipe.base_stage.PipelineStage attribute)
(txpipe.lens_selector.TXExternalLensCatalogSplitter attribute)
NOfZFile (class in txpipe.data_types.types)
number_of_realizations() (txpipe.data_types.types.ClusteringNoiseMaps method)
(txpipe.data_types.types.LensingNoiseMaps method)
O
object (txpipe.twopoint.Measurement attribute)
open() (txpipe.data_types.base.DataFile class method)
(txpipe.data_types.base.Directory class method)
(txpipe.data_types.base.FitsFile class method)
(txpipe.data_types.base.HDFFile class method)
(txpipe.data_types.base.PickleFile class method)
(txpipe.data_types.base.PNGFile class method)
(txpipe.data_types.types.SACCFile class method)
open_output() (txpipe.base_stage.PipelineStage method)
outputs (txpipe.base_stage.PipelineStage attribute)
P
path_for_file() (txpipe.data_types.base.FileCollection method)
PhotozPDFFile (class in txpipe.data_types.types)
PickleFile (class in txpipe.data_types.base)
PipelineStage (class in txpipe.base_stage)
plot() (txpipe.data_types.types.MapsFile method)
(txpipe.data_types.types.NOfZFile method)
plot_gnomonic() (txpipe.data_types.types.MapsFile method)
plot_healpix() (txpipe.data_types.types.MapsFile method)
PNGFile (class in txpipe.data_types.base)
prepare_mappers() (txpipe.auxiliary_maps.TXAuxiliaryLensMaps method)
(txpipe.auxiliary_maps.TXAuxiliarySourceMaps method)
(txpipe.maps.TXBaseMaps method)
(txpipe.maps.TXLensMaps method)
(txpipe.maps.TXMainMaps method)
(txpipe.maps.TXSourceMaps method)
(txpipe.noise_maps.TXExternalLensNoiseMaps method)
(txpipe.noise_maps.TXSourceNoiseMaps method)
prepare_output() (txpipe.photoz.TXRandomPhotozPDF method)
(txpipe.photoz_mlz.PZPDFMLZ method)
prepare_patches() (txpipe.twopoint.TXTwoPoint method)
PZPDFMLZ (class in txpipe.photoz_mlz)
R
random_points_in_quadrilateral() (in module txpipe.randoms.randoms)
random_points_in_triangle() (in module txpipe.randoms.randoms)
RandomsCatalog (class in txpipe.data_types.types)
read() (txpipe.data_types.base.PickleFile method)
(txpipe.data_types.base.YamlFile method)
read_catalog_info() (txpipe.data_types.types.ShearCatalog method)
read_density_split() (txpipe.data_types.types.ClusteringNoiseMaps method)
read_gnomonic() (txpipe.data_types.types.MapsFile method)
read_healpix() (txpipe.data_types.types.MapsFile method)
read_listing() (txpipe.data_types.base.FileCollection method)
read_map() (txpipe.data_types.types.MapsFile method)
read_map_info() (txpipe.data_types.types.MapsFile method)
read_mask() (txpipe.data_types.types.MapsFile method)
read_nbin() (txpipe.data_types.types.TomographyCatalog method)
(txpipe.twopoint.TXTwoPoint method)
read_provenance() (txpipe.data_types.base.DataFile method)
(txpipe.data_types.base.Directory method)
(txpipe.data_types.base.FitsFile method)
(txpipe.data_types.base.HDFFile method)
(txpipe.data_types.base.PickleFile method)
(txpipe.data_types.base.PNGFile method)
(txpipe.data_types.base.YamlFile method)
(txpipe.data_types.types.SACCFile method)
read_rotation() (txpipe.data_types.types.LensingNoiseMaps method)
read_shear_catalog_type() (in module txpipe.utils.calibration_tools)
read_zbins() (txpipe.data_types.types.TomographyCatalog method)
remove_undetected() (txpipe.input_cats.TXCosmoDC2Mock method)
rename_iterated() (in module txpipe.utils.misc)
repack() (in module txpipe.utils.hdf_tools)
required_columns (txpipe.data_types.base.FitsFile attribute)
required_datasets (txpipe.data_types.base.HDFFile attribute)
(txpipe.data_types.types.LensingNoiseMaps attribute)
(txpipe.data_types.types.MapsFile attribute)
(txpipe.data_types.types.NOfZFile attribute)
(txpipe.data_types.types.PhotozPDFFile attribute)
(txpipe.data_types.types.RandomsCatalog attribute)
(txpipe.data_types.types.TomographyCatalog attribute)
run() (txpipe.base_stage.PipelineStage method)
(txpipe.blinding.TXBlinding method)
(txpipe.blinding.TXNullBlinding method)
(txpipe.lens_selector.TXBaseLensSelector method)
(txpipe.photoz.TXRandomPhotozPDF method)
(txpipe.photoz_mlz.PZPDFMLZ method)
(txpipe.photoz_stack.TXPhotozLensStack method)
(txpipe.photoz_stack.TXPhotozSourceStack method)
(txpipe.source_selector.TXSourceSelector method)
(txpipe.twopoint.TXTwoPoint method)
S
SACCFile (class in txpipe.data_types.types)
save_file() (txpipe.data_types.types.CSVFile method)
save_maps() (txpipe.maps.TXBaseMaps method)
save_plot() (txpipe.data_types.types.NOfZFile method)
select_lens() (txpipe.lens_selector.TXBaseLensSelector method)
setup_output() (txpipe.lens_selector.TXBaseLensSelector method)
(txpipe.source_selector.TXSourceSelector method)
ShearCatalog (class in txpipe.data_types.types)
smooth_nz() (in module txpipe.plotting.correlations)
suffix (txpipe.data_types.base.DataFile attribute)
(txpipe.data_types.base.Directory attribute)
(txpipe.data_types.base.FileCollection attribute)
(txpipe.data_types.base.FitsFile attribute)
(txpipe.data_types.base.HDFFile attribute)
(txpipe.data_types.base.PickleFile attribute)
(txpipe.data_types.base.PNGFile attribute)
(txpipe.data_types.base.TextFile attribute)
(txpipe.data_types.base.YamlFile attribute)
(txpipe.data_types.types.CSVFile attribute)
(txpipe.data_types.types.SACCFile attribute)
supports_parallel_write (txpipe.data_types.base.DataFile attribute)
(txpipe.data_types.base.HDFFile attribute)
T
TextFile (class in txpipe.data_types.base)
theory_3x2pt() (in module txpipe.utils.theory)
to_ccl() (txpipe.data_types.types.FiducialCosmology method)
TomographyCatalog (class in txpipe.data_types.types)
TXAuxiliaryLensMaps (class in txpipe.auxiliary_maps)
TXAuxiliarySourceMaps (class in txpipe.auxiliary_maps)
TXBaseLensSelector (class in txpipe.lens_selector)
TXBaseMaps (class in txpipe.maps)
TXBlinding (class in txpipe.blinding)
TXBrighterFatterPlot (class in txpipe.psf_diagnostics)
TXBuzzardMock (class in txpipe.input_cats)
TXConvergenceMapPlots (class in txpipe.convergence)
TXConvergenceMaps (class in txpipe.convergence)
TXCosmoDC2Mock (class in txpipe.input_cats)
TXDensityMaps (class in txpipe.maps)
TXExposureInfo (class in txpipe.exposure_info)
TXExternalLensCatalogSplitter (class in txpipe.lens_selector)
TXExternalLensMaps (class in txpipe.maps)
TXExternalLensNoiseMaps (class in txpipe.noise_maps)
TXFourierGaussianCovariance (class in txpipe.covariance)
TXIngestRedmagic (class in txpipe.ingest_redmagic)
TXIngestStars (class in txpipe.metacal_gcr_input)
TXLensCatalogSplitter (class in txpipe.lens_selector)
TXLensDiagnosticPlots (class in txpipe.diagnostics)
TXLensMaps (class in txpipe.maps)
TXLensTrueNumberDensity (class in txpipe.photoz_stack)
TXMainMaps (class in txpipe.maps)
TXMapCorrelations (class in txpipe.map_correlations)
TXMapPlots (class in txpipe.map_plots)
TXMeanLensSelector (class in txpipe.lens_selector)
TXMetacalGCRInput (class in txpipe.metacal_gcr_input)
TXModeLensSelector (class in txpipe.lens_selector)
TXNoiseMaps (class in txpipe.noise_maps)
TXNullBlinding (class in txpipe.blinding)
TXPhotozLensStack (class in txpipe.photoz_stack)
TXPhotozPlots (class in txpipe.photoz_stack)
TXPhotozSourceStack (class in txpipe.photoz_stack)
txpipe.auxiliary_maps
module
txpipe.base_stage
module
txpipe.blinding
module
txpipe.convergence
module
txpipe.covariance
module
txpipe.data_types.base
module
txpipe.data_types.types
module
txpipe.diagnostics
module
txpipe.exposure_info
module
txpipe.ingest_redmagic
module
txpipe.input_cats
module
txpipe.lens_selector
module
txpipe.map_correlations
module
txpipe.map_plots
module
txpipe.mapping.basic_maps
module
txpipe.mapping.dr1
module
txpipe.maps
module
txpipe.masks
module
txpipe.metacal_gcr_input
module
txpipe.metadata
module
txpipe.noise_maps
module
txpipe.photoz
module
txpipe.photoz_mlz
module
txpipe.photoz_stack
module
txpipe.plotting.correlations
module
txpipe.plotting.histogram
module
txpipe.psf_diagnostics
module
txpipe.random_cats
module
txpipe.randoms.randoms
module
txpipe.source_selector
module
txpipe.twopoint
module
txpipe.twopoint_fourier
module
txpipe.utils.calibration_tools
module
txpipe.utils.fitting
module
txpipe.utils.hdf_tools
module
txpipe.utils.healpix
module
txpipe.utils.misc
module
txpipe.utils.mpi_utils
module
txpipe.utils.nmt_utils
module
txpipe.utils.provenance
module
txpipe.utils.theory
module
txpipe.utils.timer
module
TXPSFDiagnostics (class in txpipe.psf_diagnostics)
TXRandomCat (class in txpipe.random_cats)
TXRandomPhotozPDF (class in txpipe.photoz)
TXRealGaussianCovariance (class in txpipe.covariance)
TXRoweStatistics (class in txpipe.psf_diagnostics)
TXSimpleMask (class in txpipe.masks)
TXSourceDiagnosticPlots (class in txpipe.diagnostics)
TXSourceMaps (class in txpipe.maps)
TXSourceNoiseMaps (class in txpipe.noise_maps)
TXSourceSelector (class in txpipe.source_selector)
TXSourceTrueNumberDensity (class in txpipe.photoz_stack)
TXStarDensityTests (class in txpipe.psf_diagnostics)
TXStarShearTests (class in txpipe.psf_diagnostics)
TXTracerMetadata (class in txpipe.metadata)
TXTruthLensSelector (class in txpipe.lens_selector)
TXTwoPoint (class in txpipe.twopoint)
TXTwoPointFourier (class in txpipe.twopoint_fourier)
U
unique_list() (in module txpipe.utils.misc)
V
validate() (txpipe.data_types.base.DataFile method)
(txpipe.data_types.base.FitsFile method)
(txpipe.data_types.base.HDFFile method)
value (txpipe.twopoint_fourier.Measurement attribute)
W
win (txpipe.twopoint_fourier.Measurement attribute)
write() (txpipe.data_types.base.PickleFile method)
(txpipe.data_types.base.YamlFile method)
write_global_values() (txpipe.lens_selector.TXBaseLensSelector method)
(txpipe.source_selector.TXSourceSelector method)
write_listing() (txpipe.data_types.base.FileCollection method)
write_map() (txpipe.data_types.types.MapsFile method)
write_output() (txpipe.input_cats.TXCosmoDC2Mock method)
(txpipe.photoz.TXRandomPhotozPDF method)
(txpipe.photoz_mlz.PZPDFMLZ method)
write_provenance() (txpipe.data_types.base.DataFile method)
(txpipe.data_types.base.Directory method)
(txpipe.data_types.base.FitsFile method)
(txpipe.data_types.base.HDFFile method)
(txpipe.data_types.base.PickleFile method)
(txpipe.data_types.base.PNGFile method)
(txpipe.data_types.base.YamlFile method)
write_tomography() (txpipe.lens_selector.TXBaseLensSelector method)
(txpipe.source_selector.TXSourceSelector method)
Y
YamlFile (class in txpipe.data_types.base)